Gene:
Gene Symbol:
Gene Name:
Original Clone ID:
ASU_CoV_005-C
Keyword:
"Split in to 3 ORFs, with 50 aa overlap"
Species:
Human coronavirus OC43
Type:
cDNA
Vector Name:
pJFT7_cHalo-3xFlag_DC
Format:
FUSION
Source:
Center for Personalized Diagnostics
Description:
None
Comments:
None
Mutation / Discrepancy:
No / No
Publications:
None
Authors:
Center for Personalized Diagnostics
HcCD00960214
Price:
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AVAILABLE
No restriction
Special MTA: HALO
Special MTA: HALO
Insert sequence: 2052nts
Open reading frame: 1 to 2052
ATGAGTTTGTCTATTGTTGATGTGTATGATATGTGGCTTACAGGTTGTAAGTATGTTGTT
AGAACTGCTAATGCTTTGAGCAGAGCAGTTAACGTACCTACAATACGTAAGTTTATAAAA
TTTGGTATGACTCTTGTTAGTATACCAATTGATTTGTTAAATTTAAGAGAGATTAAGCCT
GCTGTTAATGTGGTTAAAGCTGTGCGAAATAAAATTTCTGTATGCTTTAATTTTATTAAA
TGGCTTTTTGTCTTATTATTTGGCTGGATTAAAATATCCGCTGATAATAAAGTAATCTAC
ACCACAGAAATTGCATCAAAGCTTACGTGTAAGCTTGTAGCTTTAGCTTTTAAAAATGCA
TTTTTGACATTTAAGTGGAGTATGGTTGCTAGAGGTGCTTGCATTATAGCGACTATATTT
CTATTGTGGTTTAATTTTATATATGCCAATGTAATTTTTAGTGATTTTTATTTGCCTAAA
ATCGGTTTCTTGCCGACTTTTGTTGGTAAGATTGCACAGTGGATTAAGAACACTTTTAGT
CTTGTAACTATTTGTGATCTATATTCCATTCAGGATGTGGGTTTTAAGAATCAGTATTGT
AATGGAAGTATTGCATGTCAGTTCTGCTTGGCAGGATTTGATATGTTAGATAATTATAAA
GCCATTGATGTAGTACAGTATGAAGCTGATAGGAGAGCATTTGTTGATTATACAGGTGTG
TTAAAGATTGTCATTGAATTGATAGTTAGTTACGCCCTGTATACGGCATGGTTTTATCCA
TTGTTTGCCCTTATCAGTATTCAGATCTTGACCACTTGGCTGCCTGAGCTTTTTATGCTT
AGTACATTACATTGGAGTTTTAGGTTGCTGGTGGCTTTAGCTAATATGTTACCAGCACAT
GTGTTTATGAGGTTTTATATTATTATTGCCTCTTTTATTAAGCTCTTTAGCTTGTTTAGG
CATGTTGCCTATGGTTGTAGTAAATCTGGTTGTTTGTTTTGTTACAAGAGGAATCGTAGT
CTACGTGTTAAATGTAGTACTATCGTTGGTGGCATGATACGCTATTACGATGTTATGGCT
AATGGTGGCACTGGCTTTTGTTCAAAACATCAATGGAATTGCATTGATTGTGATTCTTAT
AAACCAGGTAATACTTTTATTACTGTTGAGGCCGCTCTTGATCTATCTAAGGAATTGAAA
CGGCCCATTCAGCCTACAGATGTTGCTTATCATACGGTTACTGATGTTAAGCAAGTTGGT
TGTTCTATGCGCTTGTTCTATGATCGTGATGGACAGCGCACATATGATGATGTTAATGCT
AGTTTGTTTGTGGATTATAGTAATTTGCTACATTCTAAGGTTAAGAGTGTGCCTAATATG
CATGTTGTGGTAGTGGAAAATGATGCTGATAAAGCCAATTTTCTGAATGCTGCTGTATTT
TATGCACAGTCTTTGTTTAGACCTATTTTAATGGTTGATAAAAATCTGATAACTACTGCT
AACACTGGTACGTCTGTTACAGAAACTATGTTTGATGTTTATGTGGATACATTTTTGTCT
ATGTTTGATGTGGATAAAAAGAGTCTTAATGCTTTAATAGCAACTGCGCATTCTTCTATA
AAACAGGGTACGCAGATTTATAAAGTTTTGGATACCTTTTTAAGCTGTGCTCGTAAAAGT
TGTTCTATTGATTCAGATGTTGATACTAAGTGTTTAGCTGATTCTGTCATGTCTGCTGTA
TCGGCAGGTCTTGAATTGACGGATGAAAGTTGTAATAACTTGGTGCCAACATATTTGAAG
AGTGACAACATTGTGGCAGCTGATTTAGGTGTTCTGATTCAAAATTCTGCAAAGCATGTG
CAGGGTAATGTTGCTAAAATAGCTGGTGTTTCCTGTATATGGTCTGTGGATGCTTTTAAT
CAGTTTAGTTCTGATTTCCAGCATAAATTGAAGAAAGCATGTTGTAAAACTGGTTTGAAA
CTGAAGCTTACTTATAATAAGCAGATGGCTAATGTCTCTGTTTTAACTACACCCTTTAGT
CTTAAAGGGGGT
Protein sequence predicted based on nucleotide sequence
MSLSIVDVYDMWLTGCKYVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKP AVNVVKAVRNKISVCFNFIKWLFVLLFGWIKISADNKVIYTTEIASKLTCKLVALAFKNA FLTFKWSMVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFS LVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGV LKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSFRLLVALANMLPAH VFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMA NGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVG CSMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDADKANFLNAAVF YAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSI KQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLK SDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKKACCKTGLK LKLTYNKQMANVSVLTTPFSLKGG
Coding Sequence Details
Insert Sequence Verified?:
Y
Verification Method:
Sequence Verification
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
None
3' Linker Sequence:
None
Recommended Growth Condition:
Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:
bacterial
Marker:
ampicillin
Bacterial Selection Condition:
100 ug/mL ampicillin
Growth Condition:
Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:
Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results:
None
Recommended expression in:
Not Applicable
Vector Name:
pJFT7_cHalo-3xFlag_DC
Synonyms:
''
Description:
In vitro expression vector with a T7 promoter and C-terminal TEV-cleavable HALO-3xFlag tag; ampicillin resistance in bacteria; Gateway or Flexi cloning compatible
Comments:
None
Size (bp):
6274
Parent Vector:
None
Properties:
Gateway, acceptor (destination), in vitro transcription, recombinational cloning
Author Name:
Arizona State University
Joshua LaBaer
Justin Saul
Ji Qiu
Fernanda Festa
Center for Personalized Diagnostics
Joshua LaBaer
Justin Saul
Ji Qiu
Fernanda Festa
Center for Personalized Diagnostics
Publications:
None
Vector Map:
Vector Sequence:
Sequence:
Vector Features:
Type
Name
Description
Start
End
bacterial origin
ColE
ColE1 bacterial origin
3559
4241
bacterial origin
M13 Ori
M13 origin
5365
6090
death cassette
ccdB
Gateway ccdB death Cassette (DC) (removed in plasmids with inserts)
556
2210
death cassette 2
ccdB (BsrGI removed)
ccdB (BsrGI removed)
1765
2070
enhancer
CITE
CITE enhancer
388
408
primer
NAP150
NAP150F forward sequencing primer cccattgtatgggatctgatc (sequencing starts before the 3xFlag-HALO tag)
388
408
primer
reverse primer
cHaloseqR reverse sequencing primer CAACATCGACGTAGTGCAT (used for sequencing the gene insert)
2351
2369
promoter
T7
T7 promoter
6250
3
protease cleavage site
TEV
TEV protease cleavage site EDLYFQS (removes C-terminal HALO 3xFlag tag)
2258
2278
recombination site
attR1
attR1 recombination site
531
555
recombination site
attR2
attR2 recombination site
2211
2235
reporter gene
LacZ
LacZ alpha gene
6095
6163
selectable marker
CmR
Chloramphenicol resistance gene (removed in plasmids containing gene inserts)
764
1420
selectable marker
AmpR
ampicillin resistance gene
4339
4998
ssDNA origin
f1
f1 origin
5767
6073
tag
Flag
C-terminal 3xFlag tag
3179
3247
tag
HALO
C-terminal Halo tag
2294
3178
trxn termination sequence
T7 term
T7 transcription terminator
3319
3337
